Showing 16 open source projects for "python data analysis"

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  • 1
    Eventer

    Eventer

    Rapid, unbiased, reproducible analysis of synaptic events

    ...The software combines deconvolution for detection, and variable length template matching approaches for screening out false positive events. Eventer also includes a machine learning-based approach allowing users to train a model to implement their ‘expert’ selection criteria across data sets without bias. Sharing models allows users to implement consistent analysis procedures. The software is coded in MATLAB, but has been compiled as standalone applications for Windows, Mac and Linux. Please visit the official Eventer website for more info https://eventerneuro.netlify.app/ While the paper is in preparation, please cite as; Winchester, G., Liu, S., Steele, O.G., Aziz, W. and Penn, A.C. (2020) Eventer. ...
    Downloads: 9 This Week
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  • 2
    CometAnalyser

    CometAnalyser

    CometAnalyser, for quantitative comet assay analysis.

    Description: Comet assay provides an easy solution to estimate DNA damage in single cells through microscopy assessment. To obtain reproducible and reliable quantitative data, we developed an easy-to-use tool named CometAnalyser. CometAnalyser is an open-source deep-learning tool designed for the analysis of both fluorescent and silver-stained wide-field microscopy images. Once the comets are segmented and classified, several intensity/morphological features are automatically exported as a spreadsheet file. ...
    Downloads: 8 This Week
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  • 3
    mTRF-Toolbox

    mTRF-Toolbox

    A MATLAB package for modelling multivariate stimulus-response data

    mTRF-Toolbox is a MATLAB package for modelling multivariate stimulus-response data, suitable for neurophysiological data such as MEG, EEG, sEEG, ECoG and EMG. It can be used to model the functional relationship between neuronal populations and dynamic sensory inputs such as natural scenes and sounds, or build neural decoders for reconstructing stimulus features and developing real-time applications such as brain-computer interfaces (BCIs). Toolbox Paper: ...
    Downloads: 6 This Week
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  • 4
    Armadillo

    Armadillo

    fast C++ library for linear algebra & scientific computing

    * Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads:...
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    Downloads: 2,782 This Week
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  • 5
    Phenalysis

    Phenalysis

    Analyze agronomic plant research plots in aerial orthomosaic images.

    A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on...
    Downloads: 0 This Week
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  • 6

    OpenFace

    A state-of-the-art facial behavior analysis toolkit

    OpenFace is an advanced facial behavior analysis toolkit intended for computer vision and machine learning researchers, those in the affective computing community, and those who are simply interested in creating interactive applications based on facial behavior analysis. The OpenFace toolkit is capable of performing several complex facial analysis tasks, including facial landmark detection, eye-gaze estimation, head pose estimation and facial action unit recognition. OpenFace is able to...
    Downloads: 26 This Week
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  • 7

    BioRec:Bird Census field data annotation

    Recognizing biological data from a notebook.

    This project helps to digitize field data for a certain Bird Census method. Namely, bird census based on personal inspection or small (~10 km^2) regions with recording birds' position and behaviour on paper. This project makes it easy to annotate such field data and to make this data available for statistical analysis.
    Downloads: 0 This Week
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  • 8
    All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit https://sourceforge.net/projects/scixminer/ to download the newest version. The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
    Downloads: 0 This Week
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  • 9
    Mass-based dissimilarity

    Mass-based dissimilarity

    A data dependent dissimilarity measure based on mass estimation.

    This software calculates the mass-based dissimilarity matrix for data mining algorithms relying on a distance measure. References: Overcoming Key Weaknesses of Distance-based Neighbourhood Methods using a Data Dependent Dissimilarity Measure. KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files". The presentation video in KDD 2016 is published on https://youtu.be/eotD_-SuEoo . Since this software is licensed...
    Downloads: 0 This Week
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  • 10
    Matlab Community Detection Toolbox

    Matlab Community Detection Toolbox

    CDTB is a MATLAB toolbox which performs Community Detection

    We present the Community Detection Toolbox (CDTB), a MATLAB toolbox which can be used to perform community detection. The CDTB contains several functions from the following categories. 1. graph generators; 2. clustering algorithms; 2. cluster number selection functions; 4. clustering evaluation functions. Furthermore, CDTB is designed in a parametric manner so that the user can add his own functions and extensions. The CDTB can be used in at least three ways. The user can employ...
    Downloads: 0 This Week
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  • 11

    Fish4Knowledge Project

    Analysis of undersea fish videos

    The Fish4knowledge project investigated: information abstraction and storage methods for analyzing undersea video data (from 10E+15 pixels to 10E+12 units of information), machine and human vocabularies for detecting & describing fish, flexible process architectures to process the data and scientific queries and effective specialised user query interfaces. A combination of computer vision, database storage, workflow and human computer interaction methods were used to achieve this. ...
    Downloads: 0 This Week
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  • 12
    This is a Matlab software package for single molecule FRET data analysis.
    Downloads: 1 This Week
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  • 13
    Projeny (Probablistic Networks Generator in Java) is a graphical (Java SWT) front-end to BNT (Bayes Net Toolbox for Matlab). Projeny requires BNT, JMatLink and a Matlab back-end. There is no installable release package, but source code is available on SVN - please check out from SVN to use Projeny. Projeny was started with BNJ as the base.
    Downloads: 0 This Week
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  • 14
    Design and develop Recommendation and Adaptive Prediction Engines to address eCommerce opportunities. Build a portfolio of engines by creating and porting algorithms from multiple disciplines to a usable form. Try to solve NetFlix and other challenges.
    Downloads: 0 This Week
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  • 15
    nBoost is a suite of boosting algorithms designed to solve binary classification problems on data that is not linearly separable by a convex combination of base hypotheses, i.e. noisy data. WARNING: Active development. Underlying algorithm is unstable.
    Downloads: 0 This Week
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  • 16
    Matlab and Octave code to fit a mixture of Gaussians with covariance regularization to data using EM update rules.
    Downloads: 0 This Week
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