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NOTE: The source repository for this project has been moved to a NEW LOCATION: ************************************************************************************ https://github.com/imagingbook/imagingbook-public ************************************************************************************

Update: A graphical user interface for RootAnalyzer, along with other root phenotyping tools can now be found at https://sourceforge.net/projects/rootphenotypingsuite/ RootAnalyzer is a fully automated tool, for efficiently extracting and analyzing anatomical traits from root cross section images. Using a range of image processing techniques such as local thresholding and nearest neighbor identification, RootAnalyzer segments the plant root from the image's background, classifies and characterizes the cortex, stele, endodermis and metaxylem, and subsequently produces statistics about the morphological properties of the root cells and tissues.

...Note, since this plug-in is written in python and involves optimization problems and non-filter operations, this script's runtime can be rather long, depending on the size of your image selection. Consider donating to this project: https://sourceforge.net/projects/gimp-g-e/donate

The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation.

...It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox. Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage

...MDSTk has been forked by 3Dim Laboratory s.r.o. to provide better support and further push its development forward. Please check VPL (Voxel Processing Library) project available on Bitbucket (https://bitbucket.org/3dimlab/vpl).

...Saving of capture image in jpg, jpeg and png formats. Future plans include timer based repeat, email capability and basic image processing like rotate, sharpen. Moved to GitHub: https://github.com/goravtaneza/jcapture

...The decoder takes the JBIG2 image processing technology developed for the JPedal PDF renderer in 2007 and makes it available as a generic library for more general usage. The JDeli Image Library https://www.idrsolutions.com/jdeli contains a much enhanced and faster version and also provides a complete ImageIO replacement (see https://www.idrsolutions.com/jdeli/imageio-replacement) for Tiff, JPEG, JPEG2000, Png as well as lots of other image formats including Dicom, WMF, PSD, SGI and WebP.