Search Results for "python data analysis" - Page 16
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Showing 879 open source projects for "python data analysis"
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DeNovoCheck
DeNovoCheck: Inheritance analysis for NGS trio data
DeNovoCheck is intended to be used for inheritance analysis in NGS tio data. For rare dominant Mendelian diseases, patient-parent trios are often used to reduce the number of candidate variants. The algorithm bases the inheritance prediction on the data available in the parental BAM files and allows for a fast and reliable selection of potential de novo variants. -
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jHepWork
jHepWork was a name of the DataMelt program in 2005-20013
jHepWork (2005-2013) was an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with the Jython (Python) scripting language. Currently the project is known under the name DataMelt (https://datamelt.org) -
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The Prajna project is a collection of tools and utility classes combining visualization, geographic displays, data fusion, and semantic reasoning into a cohesive toolkit for enhancing information discovery and reasoning.
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CapCode is a navigation software for sailors for cruising or regatta. - Reads NMEA 183 data (instruments, GPS, AIS). Implements computation of the VMG , tracing on RNC and ENC (S-57) charts. Display the polar on the chart, future position of the ship. Weather information acquired from grib files are also displayed in the navigation view. developed as an Eclipse RCP in its versions 2.x.x
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BinBase
BinBase is a software for the automatic analysis of Massspec data from
BinBase is a software for the automatic analysis of Massspec data from LECO GC-Tofs. All code and documentation has been moved to the google code site of this project: https://code.google.com/p/binbase/ And support is provided by the company coding and more, which can be reached under: contact@codingandmore.org -
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HadStat
HadStat is service on cloud,for data analysis using Hadoop MapReduce.
HadStat is service on the cloud, allow you to analysis the data on the cloud and return the result in nice graph,this service is free, you can redistribute it and/or modify it under the terms of the GNU General Public License. this service using many technologies , like Hadoop mapreduce, HTML, PHP, Web Service applications, linux server, java, eclipse IDE, with many indicators:Simple moving average (SMA),Exponential moving average (EMA),Smoothed simple moving average (SMMA),Linear weighted moving average (LWMA )on DATA from NYSE daily prices..... -
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GEPETTO - Gene Prioritization in Java
GEPETTO (GEne Prioritization ExTended TOol)
...GEPETTO is written in Java/Python and supported by an advanced modular architecture, which means that it can easily be modified and extended by the user, in order to include alternative scoring methods and new data sources. We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database. Contact: bmhoan@gmail.com or walter.vincent.fr@gmail.com -
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BMDExpress is a bioinformatics tool used to analyze microarray dose-response data. The analysis provides benchmark dose estimates at which different cellular processes are altered in toxicogenomic experiments.
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MBMLog
Log collector for FortiGate units (v4 MR3)
MBM-Log allows to look deeply in collected logs (not only Top 10). All charts are generated on demand. You can easily filter data. MBM-Log can help you with FortiGate diagnostics via SSH (built in commands) Java GUI application. -
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JProGraM (PRObabilistic GRAphical Models in Java) is a statistical machine learning library. It supports statistical modeling and data analysis along three main directions: (1) probabilistic graphical models (Bayesian networks, Markov random fields, dependency networks, hybrid random fields); (2) parametric, semiparametric, and nonparametric density estimation (Gaussian models, nonparanormal estimators, Parzen windows, Nadaraya-Watson estimator); (3) generative models for random networks (small-world, scale-free, exponential random graphs, Fiedler random fields), subgraph sampling algorithms (random walk, snowball, etc.), and spectral decomposition.
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AgED
AgED - Analysis given Experimental Data
AgED performs automatic feature extraction from your image data and allows for their visualization and management. AgED relies on Elliptic Fourier Transcriptors to extract features from large quantities of image data. These features can then be visualized and you can evaluate them in a statistical manner. This type of analysis is particularly worthwile in the assessment of biological experiments. -
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BroadData
Integrated to system status data based on the HDFS
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The FAKE GAME tool uses natural evolution to evolve Data Mining models. It incorporates several preprocessing, optimization and visualization methods aimed to streamline the Knowledge Discovery process. Knowledge Extraction from data is being automated!
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Jensor is a light-weight, low-overhead Java Profiler built using Java BCI. Jensor provides innovative analysis modules like JVM Replay, Pattern Analysis and Tagging Engine for technical as well as business analysis based on the same underlying data.
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MionChrom
Signal processing for chromatography
MionChrom interprets ASCII data from GC-C-IRMS systems, plots it, identifies peaks and autointegrates the results. The user can manually integrate peaks with different tools. The results is reported in *.XLS, *.TXT and *.PNG. ------------------------------------------------------ MionChrom is soon to be replaced by MionMass which isn't a open sourced project. -
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Tools developed by the Library of Congress and their partners in the National Digital Information Infrastructure and Preservation Program (NDIIPP) for the purpose of validation and transfer of data that conforms to the BagIt specification. This project has been moved to https://github.com/LibraryOfCongress
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PL-DAS
Port Logistics Data Analysis System using Process Mining
This project is for analyzing operational data from container terminal, applying process mining and port logistics domain knowledge. This project is found by Total Soft Bank, Ltd. and Busan National University, based on ProM framework (http://www.promtools.org) which is also an open source project. This project is sponsored by NIPA (National IT Industry Promotion Agency), Korea. -
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Seurat
A sequence analysis tool for normal/tumor DNA and RNA data.
THIS IS NO LONGER THE HOME FOR SEURAT. PLEASE GO TO https://sites.google.com/site/seuratsomatic/ --- Seurat is an sequence analysis program for somatic mutation and allelic imbalance discovery in paired tumor and normal genome and transcriptome data. -
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AdPreqFr4SL
Adaptive Prequential Learning Framework
The AdPreqFr4SL learning framework for Bayesian Network Classifiers is designed to handle the cost / performance trade-off and cope with concept drift. Our strategy for incorporating new data is based on bias management and gradual adaptation. Starting with the simple Naive Bayes, we scale up the complexity by gradually updating attributes and structure. Since updating the structure is a costly task, we use new data to primarily adapt the parameters and only if this is really necessary, do we... -
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jmint
jMINT - Java Mutation for Integration Testing
jMINT is a integration fault injection tool which identifies data exchanges across classes and inject faults along those path. It is primarily based on the idea of program analysis and code mutation. The cross boundary data exchanges are identified by performing data flow analysis using java byte code analysis and transformation framework-soot. Mutant injection is also done via the soot framework. jMINT tool can be used to measure the effectiveness of integration test suites. -
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A web-based interface for the Hadoop MapReduce framework that simplifies the process of writing and running MapReduce jobs. Aimed at introducing parallelism concepts in introductory computer science courses.
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BroadData
Integrated to system status data based on the HDFS
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Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
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aim is to provide support for monitoring system behaviour through dynamic analysis, and for analysing and modeling this data for a better understanding of system behaviour and for test automation
