Showing 265 open source projects for "bingo python code"

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  • 1
    CAMPARI

    CAMPARI

    Software for molecular simulations and trajectory analysis

    We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model.
    Downloads: 3 This Week
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  • 2

    Fosite - advection problem solver

    numerical simulation code for solving transport equations in 1D/2D/3D

    Fosite is a generic framework for the numerical solution of hyperbolic conservation laws in generalized orthogonal coordinates. Its main purpose is the simulation of compressible flows in accretion disks. The underlying numerical solution method belongs to the family of unsplit conservative finite volume TVD schemes. The method is 2nd order accurate in space and uses high order Runge-Kutta and multistep schemes for time evolution. In addition to the pure advection code several source terms...
    Downloads: 0 This Week
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  • 3
    LibrePLM

    LibrePLM

    LibrePLM integrates CAD editors in Odoo / LibrERP

    Save and manage Engineering informations from CAD system directly in Odoo or LibrERP. Integrated in CAD system, allows complete Product Lifecycle control. Reduce time to market, improve your business and avoid trivial errors. Server New Release : 2025 Q3 - Release on Odoo version 19.0. Client New Release : 2026 Q1 - Added Draftsight integration. Supported: Windows 11. Added new tool GetNodeID to help you asking activation code. Have more info :...
    Downloads: 3 This Week
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  • 4
    Advanced Trigonometry Calculator

    Advanced Trigonometry Calculator

    Precision Trigonometry: Advanced Calculator for Complex Math

    Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. ATC Online Alpha: https://advantrigoncalc.sourceforge.io/atc/ More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by...
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    Downloads: 14 This Week
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    Award-Winning Medical Office Software Designed for Your Specialty

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  • 5
    NuPIC

    NuPIC

    Numenta platform for intelligent computing

    The Numenta Platform for Intelligent Computing (NuPIC) is a machine intelligence platform that implements the HTM learning algorithms. HTM is a detailed computational theory of the neocortex. At the core of HTM are time-based continuous learning algorithms that store and recall spatial and temporal patterns. NuPIC is suited to a variety of problems, particularly anomaly detection and prediction of streaming data sources. For more information, see numenta.org or the NuPIC Forum. If you want...
    Downloads: 0 This Week
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  • 6
    Argo

    Argo

    ARGO is a program for analysis of electronic structure calculations

    ...This choice symbolizes the pursuit of making the best use of quantum chemical calculation results. ARGO facilitates the analysis of results obtained from quantum chemistry codes, specifically Gaussian. This task is achieved through a set of Python scripts. Our code is freely available throughout the academic community with the ambition to be used, to be supplemented by others, and become an indispensable tool for optimum utilization of quantum chemical calculation results.
    Downloads: 0 This Week
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  • 7
    DBRplot

    DBRplot

    Plots reflectivity response of Distributed Braggs Reflector mirrors

    A free windows software for designing and modelling of dielectric anti-reflection coating and Fabry-Perot cavity effects based on Distributed Braggs Reflector (DBR) mirrors. Read 'readme.txt' file before you use this application. Also, have a look at the "Fabry-Perot cavity" diagram to get a feel of the structure of your cavity. The code is written based on the Transfer Matrix Method for TE incidence. Clever insertion of the input parameters in the GUI will let you simulate the reflectivity...
    Downloads: 0 This Week
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  • 8
    GXSM

    GXSM

    Scanning Probe Microscopy Controller and Data Visualization Software

    GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured. High-Speed external PAC-PLL hardware option with digital DSP link. Based on several hardware options it supports...
    Downloads: 3 This Week
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  • 9
    Dummy-Robot

    Dummy-Robot

    My super mini robotic arm robot project

    Dummy-Robot is an open source robotics project by Peng Zhihui that showcases the design and implementation of a compact robotic arm . The repository contains full hardware design files, firmware, control software, and 3D models. It includes components such as a gripper, LED light ring PCB, wireless spatial positioning controller, and a portable case. The project demonstrates advanced engineering with stepper motor drivers, custom controllers, and debugging tools. While the original version...
    Downloads: 3 This Week
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  • 10
    TheoDORE

    TheoDORE

    Theoretical Density, Orbital Relaxation and Exciton analysis

    The TheoDORE (Theoretical Density, Orbital Relaxation and Exciton analysis) package is a general purpose program suite for the analysis of excited states obtained from quantum chemical excited state calculations. Wavefunction analysis is based on state and transition density matrices, which provides a unified formalism applicable independent of the wavefunction model. TheoDORE is interfaced to a number of quantum chemical programs (Q-Chem, Columbus, Turbomole, ...) and can be used for...
    Downloads: 2 This Week
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  • 11

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support...
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    Downloads: 101 This Week
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  • 12
    LP CSIC/UAB Apps and Code

    LP CSIC/UAB Apps and Code

    Software and Code from Laboratori de Proteòmica CSIC/UAB

    Software, Code and Documents from Laboratori de Proteòmica CSIC/UAB ( LP-CSIC/UAB: http://proteomica.uab.cat )
    Downloads: 0 This Week
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  • 13
    Xmaldi

    Xmaldi

    Viewing collections of MALDI spectra and perform PCA and DFA analyses

    Xmaldi is an application for viewing collections of MALDI spectra and perform PCA and DFA analyses on them (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/xmaldi3/code/ci/default/tree/README.md
    Downloads: 0 This Week
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  • 14
    JSONVisor

    JSONVisor

    Visor for mass spectrometry JSON files generated by Integrator

    Visor for mass spectrometry JSON files generated by the Integrator program (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/jsonvisor3/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining.
    Downloads: 0 This Week
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  • 15
    HistogramsApp

    HistogramsApp

    Application that generates KDE-PDP plots from geochronological data

    HistogramsApp is a Python 3.6 application that generates (KDE and PDP) from geochronological data .HistogramsApp allows to interactively setup plot parameters such as the bandwidth and the peak detection sensibility. To cite the application please refer to: 1) https://www.tandfonline.com/doi/abs/10.1080/00206814.2021.1954556?journalCode=tigr20 Rodriguez-Corcho, A.
    Downloads: 0 This Week
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  • 16
    LaiaMotifs

    LaiaMotifs

    Search for MHC-like motifs in peptide collections

    Search for MHC-like motifs in peptide collections (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/laiamotifs3/code/ci/default/tree/README.md
    Downloads: 0 This Week
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  • 17
    KimBlast

    KimBlast

    Blast+ the easy way

    KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md
    Downloads: 1 This Week
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  • 18
    aseryla

    aseryla

    Aseryla code repositories

    This project describes a model of how the semantic human memory represents the information relevant to the objects of the world in text format. It provides a system and a GUI application capable of extracting and managing concepts and relations from English texts. https://aseryla2.sourceforge.io/
    Downloads: 0 This Week
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  • 19
    U-Net Fusion RFI

    U-Net Fusion RFI

    U-Net for RFI Detection based on @jakeret's implementation

    See original code here: https://github.com/jakeret/tf_unet Currently this project is based on Tensorflow 1.13 code base and there are no plans to transfer to TF version 2. The primary improvements to this code base include a training and evaluation framework, along with a fusion based approach to detection, combining a number of models (currently hard coded to two trained models) along with Sum Threshold as an additional "expert." Additional work is being done to add custom layers to...
    Downloads: 0 This Week
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  • 20

    DCT

    Diffraction Contrast Tomography analysis code

    Diffraction contrast tomography code base, as developed by researchers from beamline ID19 of the ESRF, Grenoble, France, and Manchester University, UK.
    Downloads: 1 This Week
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  • 21

    TA-Lib.git: Technical Analysis Library

    Mirror of the TA-Lib project using a Git repository

    This project is intended to provide Git access to the code of the original project, TA-Lib, which uses Subversion. It is intended for system integrators wishing to use TA-Lib in their Git-managed project through Git submodules or subtrees. No actual development is being done here; all development happens in the original project.
    Downloads: 0 This Week
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  • 22

    MToolBox

    A bioinformatics pipeline to analyze mtDNA from NGS data

    MToolBox is a highly automated bioinformatics pipeline to reconstruct and analyze human mitochondrial DNA from high throughput sequencing data. MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. MToolBox provides pathogenicity scores, profiles of genome...
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    Downloads: 20 This Week
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  • 23
    PythonToolkit (PTK)
    PythonToolkit (PTK) is an interactive environment for python. It was designed to provide a python based environment similiar to Matlab for scientists and engineers however it can also be used as a general purpose interactive python environment.
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    Downloads: 5 This Week
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  • 24
    dsam
    The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
    Downloads: 0 This Week
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  • 25
    ebfformat

    ebfformat

    An Efficient Binary data Format

    EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code if needed. It is also designed to simplify the programming of input output routines in different programming languages. ...
    Downloads: 0 This Week
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