https://sourceforge.net/p/bbmap/activity/Recent activity for BBMapenMon, 30 Mar 2026 15:45:42 -0000https://sourceforge.net/p/bbmap/tickets/79/?limit=25#6b31Ack! Sorry about that, fixed in 39.81b! Thanks for the prompt notification!Brian BushnellMon, 30 Mar 2026 15:45:42 -0000https://sourceforge.net/p/bbmap/tickets/79/?limit=25#6b31https://sourceforge.net/projects/bbmap/files/BBMap_39.81b.tar.gz/downloadBBMapMon, 30 Mar 2026 15:45:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.81b.tar.gz/downloadhttps://sourceforge.net/p/bbmap/tickets/79/The jar file of v39.81 have different base class pathDaeho RoMon, 30 Mar 2026 15:04:35 -0000https://sourceforge.net/p/bbmap/tickets/79/https://sourceforge.net/projects/bbmap/files/BBMap_39.81.tar.gz/downloadBBMapSat, 28 Mar 2026 21:24:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.81.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.80.tar.gz/downloadBBMapTue, 10 Mar 2026 18:21:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.80.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.79.tar.gz/downloadBBMapMon, 02 Mar 2026 05:46:06 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.79.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.77.tar.gz/downloadBBMapThu, 26 Feb 2026 22:42:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.77.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/tree.taxtree.gz/downloadBBMapThu, 26 Feb 2026 22:33:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/tree.taxtree.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.77.tar.gz/downloadBBMapThu, 26 Feb 2026 22:25:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.77.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.76.tar.gz/downloadBBMapFri, 20 Feb 2026 19:36:03 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.76.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.75.tar.gz/downloadBBMapWed, 18 Feb 2026 06:07:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.75.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.74.tar.gz/downloadBBMapTue, 17 Feb 2026 04:19:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.74.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.73.tar.gz/downloadBBMapMon, 16 Feb 2026 05:51:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.73.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.72.tar.gz/downloadBBMapThu, 12 Feb 2026 01:54:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.72.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/ribokmers.fa.gz/downloadBBMapTue, 10 Feb 2026 17:54:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/ribokmers.fa.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.70.tar.gz/downloadBBMapMon, 09 Feb 2026 05:29:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.70.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.68.tar.gz/downloadBBMapMon, 02 Feb 2026 22:15:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.68.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.67.tar.gz/downloadBBMapSun, 01 Feb 2026 05:34:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.67.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.67.tar.gz/downloadBBMapSun, 01 Feb 2026 05:31:06 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.67.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.65.tar.gz/downloadBBMapThu, 29 Jan 2026 01:43:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.65.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.65.tar.gz/downloadBBMapThu, 29 Jan 2026 01:37:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.65.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.64.tar.gz/downloadBBMapWed, 28 Jan 2026 21:42:07 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.64.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.63.tar.gz/downloadBBMapTue, 27 Jan 2026 19:01:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.63.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.62.tar.gz/downloadBBMapSat, 10 Jan 2026 01:41:06 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.62.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.61.tar.gz/downloadBBMapTue, 06 Jan 2026 19:25:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.61.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.60.tar.gz/downloadBBMapThu, 18 Dec 2025 02:15:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.60.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.59.tar.gz/downloadBBMapMon, 15 Dec 2025 05:23:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.59.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.58.tar.gz/downloadBBMapThu, 11 Dec 2025 21:11:06 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.58.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.57.tar.gz/downloadBBMapThu, 11 Dec 2025 19:32:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.57.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.56.tar.gz/downloadBBMapSun, 07 Dec 2025 05:17:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.56.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/all_prok_16S_best_taxsorted.fa.gz/downloadBBMapThu, 04 Dec 2025 16:50:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/all_prok_16S_best_taxsorted.fa.gz/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/all_euk_18S_best_taxsorted.fa.gz/downloadBBMapThu, 04 Dec 2025 16:50:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/all_euk_18S_best_taxsorted.fa.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.55.tar.gz/downloadBBMapTue, 02 Dec 2025 22:15:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.55.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.54.tar.gz/downloadBBMapTue, 02 Dec 2025 10:06:54 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.54.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.53.tar.gz/downloadBBMapMon, 01 Dec 2025 21:36:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.53.tar.gz/downloadhttps://sourceforge.net/p/bbmap/tickets/78/filterbysequence.sh does not accept padding dashesMartin MokrejsFri, 28 Nov 2025 16:35:10 -0000https://sourceforge.net/p/bbmap/tickets/78/https://sourceforge.net/projects/bbmap/files/BBMap_39.52.tar.gz/downloadBBMapSun, 23 Nov 2025 20:13:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.52.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.51.tar.gz/downloadBBMapThu, 20 Nov 2025 19:28:06 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.51.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.50.tar.gz/downloadBBMapWed, 19 Nov 2025 21:28:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.50.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.49.tar.gz/downloadBBMapMon, 17 Nov 2025 04:32:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.49.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.48.tar.gz/downloadBBMapFri, 14 Nov 2025 17:52:06 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.48.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.47.tar.gz/downloadBBMapThu, 13 Nov 2025 21:22:28 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.47.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.46.tar.gz/downloadBBMapSat, 08 Nov 2025 02:19:06 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.46.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.45.tar.gz/downloadBBMapFri, 07 Nov 2025 05:04:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.45.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.45.tar.gz/downloadBBMapFri, 07 Nov 2025 04:37:03 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.45.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.44.tar.gz/downloadBBMapThu, 06 Nov 2025 21:24:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.44.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.43.tar.gz/downloadBBMapMon, 03 Nov 2025 22:53:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.43.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.42.tar.gz/downloadBBMapFri, 31 Oct 2025 17:23:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.42.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.41.tar.gz/downloadBBMapThu, 30 Oct 2025 23:35:06 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.41.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.40.tar.gz/downloadBBMapWed, 29 Oct 2025 17:43:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.40.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.40.tar.gz/downloadBBMapWed, 29 Oct 2025 16:59:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.40.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.39.tar.gz/downloadBBMapTue, 28 Oct 2025 18:11:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.39.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.39.tar.gz/downloadBBMapTue, 28 Oct 2025 18:07:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.39.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.38.tar.gz/downloadBBMapMon, 13 Oct 2025 01:56:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.38.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.37.tar.gz/downloadBBMapMon, 06 Oct 2025 03:44:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.37.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.36.tar.gz/downloadBBMapSat, 04 Oct 2025 01:32:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.36.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.35.tar.gz/downloadBBMapThu, 02 Oct 2025 04:52:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.35.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.34.tar.gz/downloadBBMapWed, 20 Aug 2025 16:21:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.34.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.33.tar.gz/downloadBBMapTue, 15 Jul 2025 18:37:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.33.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.32.tar.gz/downloadBBMapThu, 10 Jul 2025 20:25:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.32.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.31.tar.gz/downloadBBMapThu, 03 Jul 2025 23:21:35 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.31.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.30.tar.gz/downloadBBMapMon, 30 Jun 2025 18:04:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.30.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.29.tar.gz/downloadBBMapFri, 27 Jun 2025 21:54:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.29.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.28.tar.gz/downloadBBMapFri, 20 Jun 2025 20:07:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.28.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.27.tar.gz/downloadBBMapThu, 05 Jun 2025 18:06:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.27.tar.gz/downloadhttps://sourceforge.net/p/bbmap/tickets/77/demuxbyname.sh Exception in thread "main" java.lang.AssertionError: 22, 23, '^@'=0darked90Thu, 05 Jun 2025 13:06:32 -0000https://sourceforge.net/p/bbmap/tickets/77/https://sourceforge.net/projects/bbmap/files/BBMap_39.26.tar.gz/downloadBBMapMon, 19 May 2025 20:06:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.26.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/BBTools_List.txt/downloadBBMapWed, 14 May 2025 04:26:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/BBTools_List.txt/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/bbtools_summary.txt/downloadBBMapWed, 14 May 2025 02:29:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/bbtools_summary.txt/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/README.txt/downloadBBMapWed, 07 May 2025 15:56:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/README.txt/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/SILVA_LICENSE.txt/downloadBBMapWed, 07 May 2025 15:54:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/SILVA_LICENSE.txt/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/README.txt/downloadBBMapTue, 06 May 2025 16:37:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/README.txt/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/all_prok_16S_best.fa.gz/downloadBBMapTue, 06 May 2025 16:29:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/all_prok_16S_best.fa.gz/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/all_euk_18S_best.fa.gz/downloadBBMapTue, 06 May 2025 16:29:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/all_euk_18S_best.fa.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.25.tar.gz/downloadBBMapMon, 05 May 2025 05:41:03 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.25.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/tree.taxtree.gz/downloadBBMapMon, 05 May 2025 05:36:04 -0000https://sourceforge.net/projects/bbmap/files/Resources/tree.taxtree.gz/downloadhttps://sourceforge.net/projects/bbmap/files/Resources/refseqA48_with_ribo.spectra.gz/downloadBBMapMon, 05 May 2025 05:04:05 -0000https://sourceforge.net/projects/bbmap/files/Resources/refseqA48_with_ribo.spectra.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.24.tar.gz/downloadBBMapThu, 01 May 2025 00:43:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.24.tar.gz/downloadhttps://sourceforge.net/p/bbmap/tickets/74/?limit=25#529e/edf6I still spend all of my time developing BBTools. However, due to internal politics, the JGI website has changed to not feature any JGI-developed bioinformatics software (BBTools, MetaHipmer, etc). Feel free to send an email to JGI's director (nmouncey@lbl.gov) if you think it is helpful for JGI's users to have bioinformatics software such as BBTools on its website, because helping users is supposed to be our goal.Brian BushnellMon, 28 Apr 2025 16:36:31 -0000https://sourceforge.net/p/bbmap/tickets/74/?limit=25#529e/edf6https://sourceforge.net/p/bbmap/tickets/74/?limit=25#529eOkay, the above URL linked from the project website still does not work. However, I have found what appears to be the original content at https://archive.jgi.doe.gov/data-and-tools/software-tools/bbtools/ . I'm not sure the implication of this now being on the "archive" website - does that mean the project has been wound up? Although that doesn't appear to be consistent with the amount of recent updates (since the above post) to BBMap/ BBTools, WilliamWilliam NicholsonMon, 28 Apr 2025 16:04:05 -0000https://sourceforge.net/p/bbmap/tickets/74/?limit=25#529ehttps://sourceforge.net/p/bbmap/tickets/74/?limit=25#529eOkay, the above URL linked from the project website still does not work. However, I have found what appears to be the original content at https://archive.jgi.doe.gov/data-and-tools/software-tools/bbtools/ . I'm not sure the implication of this now being on the "archive" website - does that mean the project has been wound up? WilliamWilliam NicholsonMon, 28 Apr 2025 16:02:52 -0000https://sourceforge.net/p/bbmap/tickets/74/?limit=25#529ehttps://sourceforge.net/projects/bbmap/files/BBMap_39.23.tar.gz/downloadBBMapMon, 21 Apr 2025 16:46:03 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.23.tar.gz/downloadhttps://sourceforge.net/p/bbmap/tickets/76/?limit=25#f50aI'm asking because I can see very different results in the read number of duplicated reads when checking a specific file. When running it with fatqc I get over 90% duplications, when using fastp to calculate duplications I have only 47.3% duplicated reads, but when testing it with clumpify I get 0.213% duplication rate. I can't explain these differences, unless I'm using the wrong parameters for searching duplications. The commands for the two tools are as followed: fastp --in1 ${prefix}${file}_R1.fastq.gz...Assa YeroslavizTue, 15 Apr 2025 08:09:44 -0000https://sourceforge.net/p/bbmap/tickets/76/?limit=25#f50ahttps://sourceforge.net/p/bbmap/tickets/76/dupedist value for AVITI machineAssa YeroslavizTue, 15 Apr 2025 07:17:48 -0000https://sourceforge.net/p/bbmap/tickets/76/https://sourceforge.net/projects/bbmap/files/BBMap_39.22.tar.gz/downloadBBMapMon, 14 Apr 2025 20:40:05 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.22.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.21.tar.gz/downloadBBMapMon, 07 Apr 2025 18:47:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.21.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.20.tar.gz/downloadBBMapMon, 31 Mar 2025 20:52:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.20.tar.gz/downloadhttps://sourceforge.net/p/bbmap/tickets/75/?limit=25#8bc0/90a3Great. Thank you Brian!Heyu LinThu, 27 Mar 2025 03:04:22 -0000https://sourceforge.net/p/bbmap/tickets/75/?limit=25#8bc0/90a3https://sourceforge.net/p/bbmap/tickets/75/?limit=25#8bc0Found the problem in the parser; it will be fixed in 39.20.Brian BushnellWed, 26 Mar 2025 15:41:38 -0000https://sourceforge.net/p/bbmap/tickets/75/?limit=25#8bc0https://sourceforge.net/p/bbmap/tickets/75/?limit=25#edb9/a61b/7225OK! I'll look into it and get back to you.Brian BushnellWed, 26 Mar 2025 03:32:25 -0000https://sourceforge.net/p/bbmap/tickets/75/?limit=25#edb9/a61b/7225https://sourceforge.net/p/bbmap/tickets/75/?limit=25#edb9/a61bhi Brian, thanks for the reply. It's the newest version - 39.19. I just deployed it by conda yesterday.Heyu LinWed, 26 Mar 2025 01:17:23 -0000https://sourceforge.net/p/bbmap/tickets/75/?limit=25#edb9/a61bhttps://sourceforge.net/p/bbmap/tickets/75/?limit=25#edb9That's odd; looks to me like it should be working. What version are you using?Brian BushnellTue, 25 Mar 2025 18:30:22 -0000https://sourceforge.net/p/bbmap/tickets/75/?limit=25#edb9https://sourceforge.net/p/bbmap/tickets/75/Parameter 'stats2' in rqcfilter2.sh is not recognizedHeyu LinTue, 25 Mar 2025 15:09:39 -0000https://sourceforge.net/p/bbmap/tickets/75/https://sourceforge.net/projects/bbmap/files/BBMap_39.19.tar.gz/downloadBBMapTue, 04 Mar 2025 23:09:03 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.19.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.18.tar.gz/downloadBBMapTue, 25 Feb 2025 20:17:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.18.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.17.tar.gz/downloadBBMapSat, 15 Feb 2025 23:40:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.17.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.16.tar.gz/downloadBBMapFri, 14 Feb 2025 01:53:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.16.tar.gz/downloadhttps://sourceforge.net/projects/bbmap/files/BBMap_39.16.tar.gz/downloadBBMapFri, 14 Feb 2025 01:47:04 -0000https://sourceforge.net/projects/bbmap/files/BBMap_39.16.tar.gz/downloadhttps://sourceforge.net/p/bbmap/discussion/general/thread/3daaa5762d/?limit=25#cf10Does filterbyname remove all reads in the fastq files that match a read name in the txt file? Are duplicates in the input files an issue?Samantha M ZarnickWed, 05 Feb 2025 21:16:05 -0000https://sourceforge.net/p/bbmap/discussion/general/thread/3daaa5762d/?limit=25#cf10https://sourceforge.net/p/bbmap/tickets/74/Project website for BBMap appears to have disappearedWilliam NicholsonMon, 03 Feb 2025 12:42:40 -0000https://sourceforge.net/p/bbmap/tickets/74/