Activity for Java Treeview

RICHARD FRIEDMAN posted a comment on ticket #73

RICHARD FRIEDMAN — Tue, 01 Oct 2024 02:21:45 -0000

Alok, I wasn't referring to third party plugins. I saw several more plugins in the menu than I use. If they are automatically accessed, that's fine. No further work is necessary. Please let me know when the docs are ready and I will review them if you would like me to do so, Thanks and best wishes, Rich From: bugs@jtreeview.p.re.sourceforge.net bugs@jtreeview.p.re.sourceforge.net on behalf of Alok Saldanha alokito@users.sourceforge.net Sent: Monday, September 30, 2024 7:22 PM To: [jtreeview:bugs]...

Alok Saldanha modified a comment on ticket #73

Alok Saldanha — Mon, 30 Sep 2024 23:22:42 -0000

After testing the Windows install I set 1.2.1 as the default version of Java TreeView. I believe there are very few if any third party plugins, but will try to find some time document how to get them working with the new app bundle layout next weekend.

Alok Saldanha posted a comment on ticket #73

Alok Saldanha — Mon, 30 Sep 2024 23:22:23 -0000

I set 1.2.1 as the default version of Java TreeView. I believe there are very few if any third party plugins, but will try to find some time document how to get them working with the new app bundle layout next weekend.

Java Treeview released /jtreeview/1.2.1/README.md

Java Treeview — Mon, 30 Sep 2024 23:20:03 -0000

RICHARD FRIEDMAN posted a comment on ticket #73

RICHARD FRIEDMAN — Fri, 27 Sep 2024 04:14:34 -0000

Alok, Thank you for the new build. It worked better than expected in that on loading the cdt file I got a heatmap immediately. It is not clear what I should do to get additional plugins or of what use they are. If you would like me to test the pre-relase version once the documentation is ready I will be happy to do so. I will be out of e-mail contact for several Jewish Holidays in October, but I will have an automatic announcement on as to when I will be back and I will be happy to test anything...

Alok Saldanha posted a comment on ticket #73

Alok Saldanha — Thu, 26 Sep 2024 11:23:15 -0000

Hi Richard, I believe this issue was caused by AppTranslocation, aka Gatekeeper path randomisation. I have addressed this issue by moving the plugins and coordinates inside of the app bundle. This means that in order to add plugins or coordiantes files you will need to use the Terminal app, but should make JTV easier to use for most people. I'll probably have time to work on the documentation (and general cleanup) the weekend of Oct 5. If you have time, could you try out the newest version? http...

Java Treeview released /jtreeview/1.2.1/TreeView-1.2.1-win.zip

Java Treeview — Thu, 26 Sep 2024 11:19:03 -0000

Java Treeview released /jtreeview/1.2.1/TreeView-1.2.1-javadoc.zip

Java Treeview — Thu, 26 Sep 2024 11:19:03 -0000

Java Treeview released /jtreeview/1.2.1/TreeView-1.2.1-src.tar.gz

Java Treeview — Thu, 26 Sep 2024 11:19:03 -0000

Java Treeview released /jtreeview/1.2.1/TreeView-1.2.1-osx.zip

Java Treeview — Thu, 26 Sep 2024 11:19:03 -0000

Java Treeview released /jtreeview/1.2.1/TreeView-1.2.1-bin.tar.gz

Java Treeview — Thu, 26 Sep 2024 11:19:03 -0000

Java Treeview released /jtreeview/1.2.1/TreeView-1.2.1-applet.tar.gz

Java Treeview — Thu, 26 Sep 2024 11:19:03 -0000

Alok Saldanha committed [23598e] on Git

Alok Saldanha — Thu, 26 Sep 2024 11:16:22 -0000

Merge branch 'bugs/launch_on_mac'

Alok Saldanha committed [aba600] on Git

Alok Saldanha — Thu, 26 Sep 2024 11:11:36 -0000

downgraded nanoxml, fix bundle paths

Alok Saldanha committed [0843a0] on Git

Alok Saldanha — Thu, 26 Sep 2024 11:11:36 -0000

update java application stub

Alok Saldanha committed [d9f0f4] on Git

Alok Saldanha — Thu, 26 Sep 2024 11:11:36 -0000

comment out registration

Alok Saldanha committed [3602a5] on Git

Alok Saldanha — Thu, 26 Sep 2024 11:11:36 -0000

Update readme and changelog

RICHARD FRIEDMAN posted a comment on ticket #73

RICHARD FRIEDMAN — Tue, 24 Sep 2024 16:45:36 -0000

Alok, I am not sure if my previous reply got to you. Dear Alok, First of all, thank you for developing Java Treeview and supporting it over the years. I teach a course in bioinformatics for biologists which only uses GUIs and Java Treeview has been a great asset to my students and in my own work. I am using Version 1.2.0 . It resides in my /Applications directory I launch it by clicking it. I was unable to register, I got a "registration failed" error message. I got it working by allowing treeview...

Alok Saldanha posted a comment on ticket #73

Alok Saldanha — Sun, 22 Sep 2024 17:09:49 -0000

Hi Richard, Could you describe the issue a little more fully? 1. Which distribution of Java TreeView are you using, and how are you launching it? 2. What is an example location where you cannot open files? I seem to be able to open files in my Desktop folder on Somoma, Mac OSX 14.6.1 after fixing the bundle launcher. I am prompted to grant Java access when I navigate to that folder, but otherwise it works. There is an additional issue related to finding plugins after AppTranslocation, but after I...

RICHARD FRIEDMAN posted a comment on ticket #73

RICHARD FRIEDMAN — Fri, 20 Sep 2024 13:29:59 -0000

I have experienced the same problem with Somoma, Mac OSX 14.6.1 . I have tried the workaround above but it did not work. Is there a comparable work around for this OS? Thanks and best wishes, Richard Friedman

Carson Stacy posted a comment on ticket #73

Carson Stacy — Thu, 17 Nov 2022 20:36:03 -0000

Here is a work around I found to this issue. Posting here in case it helps anyone. It appears /bin/bash no longer has full disk access on newer versions of MacOS, which I believe the code requires. Following the following steps solved this issue for me: System Settings > Privacy & Security > Full Disk Access If present, click on lock in lower left corner to allow changes Separately, open a new finder window Select Go -> Go to Folder... from the menu bar Type /bin and click Go Drag the /bin/bash icon...

Jingyi Wu posted a comment on discussion Open Discussion

Jingyi Wu — Sat, 20 Nov 2021 20:00:36 -0000

Yes. I am able to see it in my main user folder but not Desktop, which is more convenient for me. Currently, I grant the full disk access for Java TreeView. So the suggestion from apple is not helpful because you can see the java logo in "Files and Folders" as Full Disk Access. The interesting thing is when I cancel the full disk access for Java TreeView, there is no java logo under "Files and Folders" section for selection. I think there is something wrong.

Alok Saldanha posted a comment on discussion Open Discussion

Alok Saldanha — Sat, 20 Nov 2021 16:06:09 -0000

The following may help, I will see if I can find a Big Sur machine to test on: https://support.apple.com/guide/mac-help/control-access-to-files-and-folders-on-mac-mchld5a35146/mac

Alok Saldanha posted a comment on discussion Open Discussion

Alok Saldanha — Sat, 20 Nov 2021 16:03:27 -0000

This seems very similar to the following issue reported a couple weeks back: https://sourceforge.net/p/jtreeview/bugs/73/ Are you able to see files in your main user folder?

Alok Saldanha modified ticket #5

Alok Saldanha — Sat, 20 Nov 2021 15:58:42 -0000

How to run TreeView-1.1.6r4-osx on macOS Catalina?

Alok Saldanha posted a comment on ticket #5

Alok Saldanha — Sat, 20 Nov 2021 15:58:42 -0000

Closing since I believe it is fixed in 1.2.0.

Can Goksal modified a comment on discussion Open Discussion

Can Goksal — Fri, 19 Nov 2021 23:24:31 -0000

I am having the same problem. Even when I switch file format to "all files" the folder is still empty. Did you ever figure out what was wrong?

Can Goksal posted a comment on discussion Open Discussion

Can Goksal — Fri, 19 Nov 2021 23:24:06 -0000

I am having the same problem. Even when I switch file format to "all files" the folder is still empty.

Jeffrey Lewis created ticket #73

Jeffrey Lewis — Thu, 04 Nov 2021 17:17:58 -0000

Problem "Finding" CDT Files Unless in Specific Directory

Jingyi Wu posted a comment on discussion Open Discussion

Jingyi Wu — Sat, 04 Sep 2021 02:32:35 -0000

I updated my mac system to Big Sur and reinstalled TreeView-1.2.0-osx. However, when I try to open a cdt file in my desktop, I can not. Because when I select the Desktop/Download/Document folder, it is empty from treeview browser. I did grant the full disk permission for treeview.

Alok Saldanha modified ticket #33

Alok Saldanha — Mon, 14 Dec 2020 12:30:30 -0000

Allow Treeview to run on Mac OS X without legacy Java

Alok Saldanha posted a comment on ticket #33

Alok Saldanha — Mon, 14 Dec 2020 12:30:30 -0000

Implemented in 1.2.0

Java Treeview updated /jtreeview/1.2.0/README.md

Java Treeview — Sun, 13 Dec 2020 23:30:03 -0000

Alok Saldanha committed [138f16]

Alok Saldanha — Sun, 13 Dec 2020 23:28:11 -0000

rename README

Java Treeview released /jtreeview/1.2.0/README.md

Java Treeview — Sun, 13 Dec 2020 23:28:02 -0000

Alok Saldanha committed [a6a0c8]

Alok Saldanha — Sun, 13 Dec 2020 23:26:03 -0000

overwrite with historically working JavaApplicationStub (sigh)

Alok Saldanha committed [616887]

Alok Saldanha — Sun, 13 Dec 2020 23:26:03 -0000

fixed bug in makeTars.pl

Alok Saldanha committed [8ef9e9]

Alok Saldanha — Sun, 13 Dec 2020 23:26:03 -0000

#33 updated to universalJavaApplicationStub

Java Treeview released /jtreeview/1.2.0/TreeView-1.2.0-win.zip

Java Treeview — Sun, 13 Dec 2020 23:21:04 -0000

Java Treeview released /jtreeview/1.2.0/TreeView-1.2.0-javadoc.zip

Java Treeview — Sun, 13 Dec 2020 23:21:04 -0000

Java Treeview released /jtreeview/1.2.0/TreeView-1.2.0-osx.zip

Java Treeview — Sun, 13 Dec 2020 23:21:04 -0000

Java Treeview released /jtreeview/1.2.0/TreeView-1.2.0-bin.tar.gz

Java Treeview — Sun, 13 Dec 2020 23:21:04 -0000

Java Treeview released /jtreeview/1.2.0/TreeView-1.2.0-src.tar.gz

Java Treeview — Sun, 13 Dec 2020 23:21:04 -0000

Java Treeview released /jtreeview/1.2.0/README

Java Treeview — Sun, 13 Dec 2020 23:21:04 -0000

Java Treeview released /jtreeview/1.2.0/TreeView-1.2.0-applet.tar.gz

Java Treeview — Sun, 13 Dec 2020 23:21:04 -0000

Java Treeview released /jtreeview/1.2.0/README